publications

I try to keep this list up-to-date, but I recommend also checking my google scholar profile

Please feel free to contact me if you cannot access a publication.

2026

  1. Additive genetic variance for fitness maintained by balancing selection
    Tim Connallon and Peter Czuppon
    Evolution, Jan 2026
    DOI
  2. A century of theories of balancing selection
    Filip Ruzicka, Martyna K. Zwoinska, Debora Goedert, Hanna Kokko, Xiang-Yi Li Richter, Iain R. Moodie, Sofie Nilén, Colin Olito, Erik I. Svensson, Peter Czuppon, and Tim Connallon
    Biological Reviews, 2026
    DOI

2025

  1. Maintenance of long-term transposable element activity through regulation by nonautonomous elements
    Adekanmi Daniel Omole and Peter Czuppon
    GENETICS, Jan 2025
    DOI
  2. The role of evolving niche choice in herbivore adaptation to host plants
    Peter Nabutanyi, Alitha Edison, Peter Czuppon, Shuqing Xu, and Meike J Wittmann
    Journal of Evolutionary Biology, Mar 2025
    DOI
  3. Predicting the prevalence of genetic trade-offs among adaptive substitutions
    Tim Connallon, Peter Czuppon, Colin Olito, Debora Goedert, Hanna Kokko, Angela Nava-Bolaños, Sofie Nilén, Erik I Svensson, Martyna Zwoinska, Ludovic Dutoit, and Filip Ruzicka
    Evolution, Jul 2025
    DOI
  4. The evolution of dependence and cohesion in incipient endosymbioses
    Gaurav S. Athreya, Peter Czuppon, and Chaitanya S. Gokhale
    The American Naturalist, 2025
    DOI

2024

  1. Drivers and impact of the early silent invasion of SARS-CoV-2 Alpha
    Benjamin Faucher, Chiara E. Sabbatini, Peter Czuppon, Moritz U. G. Kraemer, Philippe Lemey, Vittoria Colizza, François Blanquart, Pierre-Yves Boëlle, and Chiara Poletto
    Nature Communications, Mar 2024
    DOI
  2. Using early detection data to estimate the date of emergence of an epidemic outbreak
    Sofía Jijón, Peter Czuppon, François Blanquart, and Florence Débarre
    PLOS Computational Biology, Mar 2024
    DOI

2023

  1. Quantification and modeling of turnover dynamics of de novo transcripts in Drosophila melanogaster
    Anna Grandchamp, Peter Czuppon, and Erich Bornberg-Bauer
    Nucleic Acids Research, Nov 2023
    DOI
  2. A stochastic analysis of the interplay between antibiotic dose, mode of action, and bacterial competition in the evolution of antibiotic resistance
    Peter Czuppon, Troy Day, Florence Débarre, and François Blanquart
    PLOS Computational Biology, Aug 2023
    DOI
  3. How should we speak about years of life lost (YLL) values?
    Marius Rubo and Peter Czuppon
    European Journal of Epidemiology, Mar 2023
    DOI
  4. Harbouring Blochmannia incurs costs: a trade-off between the necessity of the obligate primary endosymbiont for brood development and its costs for adult carpenter ants (Hymenoptera: Formicidae)
    Anika Preuss, Peter Czuppon, Ulrich R. Ernst, and Jürgen Gadau
    Myrmecological News, 2023
    DOI

2022

  1. Revisiting the number of self‐incompatibility alleles in finite populations: From old models to new results
    Peter Czuppon and Sylvain Billiard
    Journal of Evolutionary Biology, Oct 2022
    DOI
  2. From individual-based epidemic models to McKendrick-von Foerster PDEs: a guide to modeling and inferring COVID-19 dynamics
    Félix Foutel-Rodier, François Blanquart, Philibert Courau, Peter Czuppon, Jean-Jil Duchamps, Jasmine Gamblin, Élise Kerdoncuff, Rob Kulathinal, Léo Régnier, Laura Vuduc, Amaury Lambert, and Emmanuel Schertzer
    Journal of Mathematical Biology, Sep 2022
    DOI
  3. Years of life lost estimates cannot always be taken at face value: Response to “COVID-19 – exploring the implications of long-term condition type and extent of multimorbidity on years of life lost: a modelling study”
    Marius Rubo and Peter Czuppon
    Wellcome Open Research, Jan 2022
    DOI

2021

  1. The stochastic dynamics of early epidemics: probability of establishment, initial growth rate, and infection cluster size at first detection
    Peter Czuppon, Emmanuel Schertzer, François Blanquart, and Florence Débarre
    Journal of The Royal Society Interface, Nov 2021
    DOI
  2. Understanding evolutionary and ecological dynamics using a continuum limit
    Peter Czuppon and Arne Traulsen
    Ecology and Evolution, May 2021
    DOI
  3. The effect of habitat choice on evolutionary rescue in subdivided populations
    Peter Czuppon, François Blanquart, Hildegard Uecker, and Florence Débarre
    The American Naturalist, 2021
    DOI
  4. Success of prophylactic antiviral therapy for SARS-CoV-2: Predicted critical efficacies and impact of different drug-specific mechanisms of action
    Peter Czuppon, Florence Débarre, Antonio Gonçalves, Olivier Tenaillon, Alan S. Perelson, Jérémie Guedj, and François Blanquart
    PLOS Computational Biology, Mar 2021
    DOI

2020

  1. The search for sexually antagonistic genes: Practical insights from studies of local adaptation and statistical genomics
    Filip Ruzicka, Ludovic Dutoit, Peter Czuppon, Crispin Y. Jordan, Xiang-Yi Li, Colin Olito, Anna Runemark, Erik I. Svensson, Homa Papoli Yazdi, and Tim Connallon
    Evolution Letters, Oct 2020
    DOI

2019

  1. Invasion and extinction dynamics of mating types under facultative sexual reproduction
    Peter Czuppon and George W A Constable
    Genetics, Oct 2019
    DOI
  2. Evolution of mating types in finite populations: The precarious advantage of being rare
    Peter Czuppon and David W. Rogers
    Journal of Evolutionary Biology, Nov 2019
    DOI

2018

  1. Limits of noise for autoregulated gene expression
    Peter Czuppon and Peter Pfaffelhuber
    Journal of Mathematical Biology, May 2018
    DOI
  2. Fixation probabilities in populations under demographic fluctuations
    Peter Czuppon and Arne Traulsen
    Journal of Mathematical Biology, Jun 2018
    DOI
  3. Disentangling eco-evolutionary effects on trait fixation
    Peter Czuppon and Chaitanya S. Gokhale
    Theoretical Population Biology, Dec 2018
    DOI

2017

  1. A spatial model for selection and cooperation
    Peter Czuppon and Peter Pfaffelhuber
    Journal of Applied Probability, 2017
    DOI

2016

  1. Multiple regulation mechanisms of bacterial quorum sensing
    Peter Kumberger, Christina Kuttler, Peter Czuppon, and Burkhard A. Hense
    BIOMATH, Aug 2016
    DOI

2015

  1. Classification of phenotypic subpopulations in isogenic bacterial cultures by triple promoter probing at single cell level
    Jan-Philip Schlüter, Peter Czuppon, Oliver Schauer, Peter Pfaffelhuber, Matthew McIntosh, and Anke Becker
    Journal of Biotechnology, Mar 2015
    DOI

2014

  1. Some limit results for Markov chains indexed by trees
    Peter Czuppon and Peter Pfaffelhuber
    Electronic Communications in Probability, Jan 2014
    DOI

2013

  1. Modeling quorum sensing in Sinorhizobium meliloti
    Matthew McIntosh, Peter Czuppon, Katharina Best, Anke Becker, and Peter Pfaffelhuber
    International Journal of Biomathematics and Biostatistics, 2013
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